Welcome to NGI Pipeline’s documentation!

NGI pipeline is a software designed to take demultiplexed Illumina flowcells and shove’em through an analysis pipeline (e.g. Piper/GATK or bcbio-nextgen).

NPI Pipeline Documentation:

• Pipeline Components
• Pipeline Code Flow

Source Code Documentation:

• ngi_pipeline
  • ngi_pipeline package
    • Subpackages
    • Module contents

Indices and tables

• Index
• Module Index
• Search Page